BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016D05LP1|AL427000
(866 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1300 1436 0.0
>3x_Contig1300
Length = 6589
Score = 1436 bits (719), Expect = 0.0
Identities = 842/869 (96%), Gaps = 15/869 (1%)
Strand = Plus / Minus
Query: 1 cagttttcacctccattcgagatctcagagatctcacacttagttgggatggttaccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 cagttttcacctccattcgagatctcagagatctcacacttagttgggatggttaccaga 5731
Query: 61 tgaatttgaatkaaaataaaaaaagtgatataattggaagattgttttaattagttatat 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 tgaatttgaatgaaaataaaaaaagtgatataattggaagattgttttaattagttatat 5671
Query: 121 ctataatactatatatctacctactttattcatataaaatatgtgtaaaatttatacaag 180
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 c-ataatac-atatatctacctactttattcatataaaatatgtgtaaaatttatacaag 5613
Query: 181 ttcattttagtagattttttgtcttctcatgtcaatattttagttcttgcaaatttctkt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5612 ttcattttagtagattttttgtcttctcatgtcaatattttagttcttgcaaatttctgt 5553
Query: 241 ttataacaagcaggcgacagcaccggcgatcaaagcaccaccgacgttgataggtagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 ttataacaagcaggcgacagcaccggcgatcaaagcaccaccgacgttgataggtagcat 5493
Query: 301 accagctgcatcgtcagaggtagatgattcagaagaagtagaggatgaagaggaggaagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 accagctgcatcgtcagaggtagatgattcagaagaagtagaggatgaagaggaggaag- 5434
Query: 361 atgatagtatgtaagaggaggttttcatcgttcatcgtcggtaagaagagctktatagca 420
|||| || ||| ||||||||| |||||||| |||||||||| |||||||||| ||||||
Sbjct: 5433 atga-ag-atg-aagaggagg-tttcatcg-tcatcgtcgg-aagaagagctg-atagca 5381
Query: 421 acgacgttagtctttggtgtaagtggcaccgttatcagagttggtaatggtgattttcga 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 acgacgttagtc-ttggtgtaagtggcaccgttatcagagttggtaatggtgattttcga 5322
Query: 481 tgtagtggaactaccaatagtggtttgtggtgctatggtgagggtcttgacgtatgaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 tgtagtggaactaccaatagtggtttgtggtgctatggtgagggtcttgacgtatgaggc 5262
Query: 541 accattgttggtgatggtagtggtcacggtggtagattcagtgtacactggagcagcaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5261 accattgttggtgatggtagtggtcacggtggtagattcagtgtacactggagcagcaga 5202
Query: 601 gtcagtttygwctttkgtgtacacgtgatcaccgttagtg-gcaacaatagttttaatgg 659
|||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5201 gtcagtgacgactttggtgtacacgtgatcaccgttagtgtgcaacaatagttttaatgg 5142
Query: 660 tggaaacggtagttgctgcttca-ca-samaaacg-gaaacagtagcagcaaagaaagcg 716
||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||
Sbjct: 5141 tggaaacggtagttgctgcttcagcagcaacaacgtgaaacagtagcagcaaagaaagcg 5082
Query: 717 gtgttggagaacttcattgtttgagtgagtttggtatttgacgtcgtactaactaccaaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5081 gtgttggagaacttcattgtttgagtgagtttggtatttgacgtcgtactaactaccaaa 5022
Query: 777 ccaagtaaraagaaaaaaaacggaaagaaagaacagaatacagaaacaccgtatcgaagc 836
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5021 ccaagtaagaagaaaaaaaacggaaagaaagaacagaatacagaaacaccgtatcgaagc 4962
Query: 837 tcgagataacaacccaattcccgagtgta 865
|||||||||||||||||||||||||||||
Sbjct: 4961 tcgagataacaacccaattcccgagtgta 4933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6872
Number of Sequences: 1807
Number of extensions: 6872
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 866
length of database: 10,358,551
effective HSP length: 16
effective length of query: 850
effective length of database: 10,329,639
effective search space: 8780193150
effective search space used: 8780193150
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)